Exports - Tab delimited

  • Download: icomm_metadata.tar.gz for a tab-delimited, gzipped text file of publicly available ICoMM environmental data
  • Description:

    • 87437 records
      FieldNOTES
      projectThis is the ICOMM project code. Not to be confused with the 'vamps_project' below
      datasetThe sequence table 'dataset' and this 'dataset' are used to link across tables
      domainArchaea,Bacteria, or Eukarya
      variableNameName of the environmental variable
      variableAmtThe measured amount of the environmental variable
      unitsThe units with which the variable amount is measured very important
      methodMethod used to prepare and measure variable
      otherOld code for loading in spreadsheets of data
      notesComplaints, criticisms and other notes about the variable
      vamps_projectThe project name used with the vamps sequence data.
      tsThe last date-time this record was updated

  • Click here for a tab-delimited, gzipped text file of publicly available ICoMM bacterial data
  • Description:

    • 1378983 records
      Field NOTES
      ida,b,e =Archaea,Bacteria,Eukarya.Id number represents total rank in data
      projectLink this to 'vamps_project' in env data
      datasetLink this to 'dataset' in env data
      sequencev6 tag sequence for bacteria and archaea, v9 for Eukarya
      taxonomyFrom vamps
      knttotal number of this sequence in this dataset
      rankrank order of this tag sequence in this dataset
      total_knttotal number of sequences in this dataset
      rel_freqrelative frequence of this sequence in this dataset (knt/total_knt)
      cluster_numcluster id from Dr. Christen's crunchclust at 3 nt difference (~95%)